""" This file contains definitions for a MEOW recipe based off of python code, along with an appropriate handler for said events. Author(s): David Marchant """ import os import itertools import nbformat import sys from typing import Any, Tuple from core.correctness.validation import check_type, valid_string, \ valid_dict, valid_event, valid_existing_dir_path, setup_debugging from core.correctness.vars import VALID_VARIABLE_NAME_CHARS, PYTHON_FUNC, \ DEBUG_INFO, EVENT_TYPE_WATCHDOG, JOB_HASH, PYTHON_EXECUTION_BASE, \ EVENT_RULE, EVENT_PATH, JOB_TYPE_PYTHON, WATCHDOG_HASH, JOB_PARAMETERS, \ PYTHON_OUTPUT_DIR, JOB_ID, WATCHDOG_BASE, META_FILE, BASE_FILE, \ PARAMS_FILE, JOB_STATUS, STATUS_QUEUED, EVENT_TYPE, EVENT_RULE from core.functionality import print_debug, create_job, replace_keywords, \ make_dir, write_yaml, write_notebook from core.meow import BaseRecipe, BaseHandler class PythonRecipe(BaseRecipe): def __init__(self, name:str, recipe:Any, parameters:dict[str,Any]={}, requirements:dict[str,Any]={}): """PythonRecipe Constructor. This is used to execute python analysis code.""" super().__init__(name, recipe, parameters, requirements) def _is_valid_recipe(self, recipe:dict[str,Any])->None: """Validation check for 'recipe' variable from main constructor. Called within parent BaseRecipe constructor.""" check_type(recipe, dict) nbformat.validate(recipe) def _is_valid_parameters(self, parameters:dict[str,Any])->None: """Validation check for 'parameters' variable from main constructor. Called within parent BaseRecipe constructor.""" valid_dict(parameters, str, Any, strict=False, min_length=0) for k in parameters.keys(): valid_string(k, VALID_VARIABLE_NAME_CHARS) def _is_valid_requirements(self, requirements:dict[str,Any])->None: """Validation check for 'requirements' variable from main constructor. Called within parent BaseRecipe constructor.""" valid_dict(requirements, str, Any, strict=False, min_length=0) for k in requirements.keys(): valid_string(k, VALID_VARIABLE_NAME_CHARS) class PythonHandler(BaseHandler): # TODO move me to base handler # handler directory to setup jobs in handler_base:str # TODO move me to conductor? # Final location for job output to be placed output_dir:str # Config option, above which debug messages are ignored debug_level:int # Where print messages are sent _print_target:Any def __init__(self, handler_base:str, output_dir:str, print:Any=sys.stdout, logging:int=0)->None: """PythonHandler Constructor. This creates jobs to be executed as python functions. This does not run as a continuous thread to handle execution, but is invoked according to a factory pattern using the handle function.""" super().__init__() self._is_valid_handler_base(handler_base) self.handler_base = handler_base self._is_valid_output_dir(output_dir) self.output_dir = output_dir self._print_target, self.debug_level = setup_debugging(print, logging) print_debug(self._print_target, self.debug_level, "Created new PythonHandler instance", DEBUG_INFO) def handle(self, event:dict[str,Any])->None: """Function called to handle a given event.""" print_debug(self._print_target, self.debug_level, f"Handling event {event[EVENT_PATH]}", DEBUG_INFO) rule = event[EVENT_RULE] # Assemble job parameters dict from pattern variables yaml_dict = {} for var, val in rule.pattern.parameters.items(): yaml_dict[var] = val for var, val in rule.pattern.outputs.items(): yaml_dict[var] = val yaml_dict[rule.pattern.triggering_file] = event[EVENT_PATH] # If no parameter sweeps, then one job will suffice if not rule.pattern.sweep: self.setup_job(event, yaml_dict) else: # If parameter sweeps, then many jobs created values_list = rule.pattern.expand_sweeps() for values in values_list: for value in values: yaml_dict[value[0]] = value[1] self.setup_job(event, yaml_dict) def valid_handle_criteria(self, event:dict[str,Any])->Tuple[bool,str]: """Function to determine given an event defintion, if this handler can process it or not. This handler accepts events from watchdog with Python recipes""" try: valid_event(event) if event[EVENT_TYPE] == EVENT_TYPE_WATCHDOG \ and type(event[EVENT_RULE].recipe) == PythonRecipe: return True, "" except Exception as e: pass return False, str(e) def _is_valid_handler_base(self, handler_base)->None: """Validation check for 'handler_base' variable from main constructor.""" valid_existing_dir_path(handler_base) def _is_valid_output_dir(self, output_dir)->None: """Validation check for 'output_dir' variable from main constructor.""" valid_existing_dir_path(output_dir, allow_base=True) def setup_job(self, event:dict[str,Any], yaml_dict:dict[str,Any])->None: """Function to set up new job dict and send it to the runner to be executed.""" meow_job = create_job( JOB_TYPE_PYTHON, event, extras={ JOB_PARAMETERS:yaml_dict, JOB_HASH: event[WATCHDOG_HASH], PYTHON_FUNC:job_func, PYTHON_OUTPUT_DIR:self.output_dir, PYTHON_EXECUTION_BASE:self.handler_base } ) print_debug(self._print_target, self.debug_level, f"Creating job from event at {event[EVENT_PATH]} of type " f"{JOB_TYPE_PYTHON}.", DEBUG_INFO) # replace MEOW keyworks within variables dict yaml_dict = replace_keywords( meow_job[JOB_PARAMETERS], meow_job[JOB_ID], event[EVENT_PATH], event[WATCHDOG_BASE] ) # Create a base job directory job_dir = os.path.join( meow_job[PYTHON_EXECUTION_BASE], meow_job[JOB_ID]) make_dir(job_dir) # write a status file to the job directory meta_file = os.path.join(job_dir, META_FILE) write_yaml(meow_job, meta_file) # write an executable notebook to the job directory base_file = os.path.join(job_dir, BASE_FILE) write_notebook(event[EVENT_RULE].recipe.recipe, base_file) # write a parameter file to the job directory param_file = os.path.join(job_dir, PARAMS_FILE) write_yaml(yaml_dict, param_file) meow_job[JOB_STATUS] = STATUS_QUEUED # update the status file with queued status write_yaml(meow_job, meta_file) # Send job directory, as actual definitons will be read from within it self.to_runner.send(job_dir) # Papermill job execution code, to be run within the conductor def job_func(job): # Requires own imports as will be run in its own execution environment import os import papermill from datetime import datetime from core.functionality import write_yaml, read_yaml, write_notebook, \ get_file_hash, parameterize_jupyter_notebook from core.correctness.vars import JOB_EVENT, EVENT_RULE, JOB_ID, \ EVENT_PATH, META_FILE, PARAMS_FILE, JOB_FILE, RESULT_FILE, \ JOB_STATUS, JOB_HASH, SHA256, STATUS_SKIPPED, JOB_END_TIME, \ JOB_ERROR, STATUS_FAILED, PYTHON_EXECUTION_BASE event = job[JOB_EVENT] # Identify job files job_dir = os.path.join(job[PYTHON_EXECUTION_BASE], job[JOB_ID]) meta_file = os.path.join(job_dir, META_FILE) job_file = os.path.join(job_dir, JOB_FILE) result_file = os.path.join(job_dir, RESULT_FILE) param_file = os.path.join(job_dir, PARAMS_FILE) yaml_dict = read_yaml(param_file) # Check the hash of the triggering file, if present. This addresses # potential race condition as file could have been modified since # triggering event if JOB_HASH in job: # get current hash triggerfile_hash = get_file_hash(job[JOB_EVENT][EVENT_PATH], SHA256) # If hash doesn't match, then abort the job. If its been modified, then # another job will have been scheduled anyway. if not triggerfile_hash \ or triggerfile_hash != job[JOB_HASH]: job[JOB_STATUS] = STATUS_SKIPPED job[JOB_END_TIME] = datetime.now() msg = "Job was skipped as triggering file " + \ f"'{job[JOB_EVENT][EVENT_PATH]}' has been modified since " + \ "scheduling. Was expected to have hash " + \ f"'{job[JOB_HASH]}' but has '{triggerfile_hash}'." job[JOB_ERROR] = msg write_yaml(job, meta_file) return # Create a parameterised version of the executable notebook try: job_notebook = parameterize_jupyter_notebook( event[EVENT_RULE].recipe.recipe, yaml_dict ) write_notebook(job_notebook, job_file) except Exception as e: job[JOB_STATUS] = STATUS_FAILED job[JOB_END_TIME] = datetime.now() msg = f"Job file {job[JOB_ID]} was not created successfully. {e}" job[JOB_ERROR] = msg write_yaml(job, meta_file) return # Execute the parameterised notebook try: papermill.execute_notebook(job_file, result_file, {}) except Exception as e: job[JOB_STATUS] = STATUS_FAILED job[JOB_END_TIME] = datetime.now() msg = f"Result file {result_file} was not created successfully. {e}" job[JOB_ERROR] = msg write_yaml(job, meta_file) return