split functionality file across new module as was getting too long on its own. All functions remian the same, but imports will need to be updated.
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@ -6,7 +6,7 @@ Author(s): David Marchant
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import os
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from core.correctness.vars import DEFAULT_JOB_OUTPUT_DIR, DEFAULT_JOB_QUEUE_DIR
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from core.functionality import make_dir, rmtree
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from functionality.file_io import make_dir, rmtree
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# testing
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